Summary Statistic posterior likelihood prior treeLikelihood.Subset1_tRNA1_2 treeLikelihood.Subset2_tRNA_3 treeLikelihood.Subset3_sRNA_1_2 treeLikelihood.Subset4_sRNA_3_noncod treeLikelihood.Subset5_cod1 treeLikelihood.Subset6_cod2 treeLikelihood.Subset7_cod3 TreeHeight gammaShape.1_tRNA1_2 gammaShape.3_sRNA_1_2 gammaShape.4_sRNA_3_noncod gammaShape.5_cod1 gammaShape.6_cod2 gammaShape.7_cod3 rateAC.3_sRNA_1_2 rateAC.4_sRNA_3_noncod rateAC.5_cod1 rateAC.6_cod2 rateAC.7_cod3 rateAG.3_sRNA_1_2 rateAG.4_sRNA_3_noncod rateAG.5_cod1 rateAG.6_cod2 rateAG.7_cod3 rateAT.3_sRNA_1_2 rateAT.4_sRNA_3_noncod rateAT.5_cod1 rateAT.6_cod2 rateAT.7_cod3 rateCG.3_sRNA_1_2 rateCG.4_sRNA_3_noncod rateCG.5_cod1 rateCG.6_cod2 rateCG.7_cod3 rateGT.3_sRNA_1_2 rateGT.4_sRNA_3_noncod rateGT.5_cod1 rateGT.6_cod2 rateGT.7_cod3 ucldStdev rate.mean rate.variance rate.coefficientOfVariation CalibratedYuleModel birthRateY ucldMean logP(mrca(plover_divergence)) mrca.age(plover_divergence) logP(mrca(skuas_and_auks)) mrca.age(skuas_and_auks) kappa1.1_tRNA1_2 kappa2.1_tRNA1_2 freqParameter.1_tRNA1_21 freqParameter.1_tRNA1_22 freqParameter.1_tRNA1_23 freqParameter.1_tRNA1_24 freqParameter.3_sRNA_1_21 freqParameter.3_sRNA_1_22 freqParameter.3_sRNA_1_23 freqParameter.3_sRNA_1_24 freqParameter.4_sRNA_3_noncod1 freqParameter.4_sRNA_3_noncod2 freqParameter.4_sRNA_3_noncod3 freqParameter.4_sRNA_3_noncod4 freqParameter.5_cod11 freqParameter.5_cod12 freqParameter.5_cod13 freqParameter.5_cod14 freqParameter.6_cod21 freqParameter.6_cod22 freqParameter.6_cod23 freqParameter.6_cod24 freqParameter.7_cod31 freqParameter.7_cod32 freqParameter.7_cod33 freqParameter.7_cod34 mean -155468.5036 -155251.9015 -216.602 -6333.0245 -3195.0479 -16833.1106 -9693.5881 -30901.5672 -52604.4 -35691.1633 132.8625 0.1738 0.2215 0.2177 0.1499 0.2838 0.201 0.0609 0.0603 0.0484 0.0441 0.0288 0.3247 0.2756 1.3196 1.8175 0.3721 0.0696 0.0692 0.0667 0.0647 0.063 0.0135 0.0121 0.0475 0.0442 8.6638E-3 0.0205 6.3901E-3 0.0552 0.2098 0.0374 0.2245 4.291E-3 9.813E-7 0.2262 -177.899 0.0238 4.3014E-3 -4.7278 75.6281 -3.4782 42.3884 9.3655 35.3648 0.361 0.2874 0.1292 0.2224 0.3502 0.2888 0.1548 0.2062 0.3635 0.2823 0.1553 0.1989 0.33 0.4012 0.063 0.2058 0.3844 0.3925 0.0437 0.1793 0.3214 0.4011 0.1012 0.1763 stderr of mean 0.3113 0.0907 0.3601 0.0413 0.0436 0.079 0.073 0.1678 0.4314 0.092 0.6178 8.2454E-5 9.5424E-5 1.2309E-4 7.0987E-5 1.1939E-4 8.0055E-5 1.393E-4 1.6364E-4 8.4603E-5 7.2869E-5 6.6718E-5 1.0882E-3 1.267E-3 5.9042E-3 8.3419E-3 1.2542E-3 1.4156E-4 1.4533E-4 9.1657E-5 7.826E-5 8.7897E-5 5.8269E-5 9.5383E-5 2.0923E-4 2.4308E-4 3.8756E-5 8.263E-5 2.1833E-4 2.6222E-4 9.8519E-4 1.2382E-4 5.9274E-4 9.6396E-6 7.1988E-9 4.8845E-4 0.0865 8.5824E-5 9.4303E-6 6.4815E-3 0.1612 1.5971E-3 0.0289 0.0146 0.0581 2.4374E-4 1.6866E-4 1.2839E-4 1.5768E-4 2.1924E-4 1.7832E-4 1.8745E-4 1.4831E-4 3.001E-4 1.9418E-4 3.2191E-4 2.1374E-4 1.5367E-4 1.3415E-4 1.1197E-4 8.322E-5 2.206E-4 1.9498E-4 8.9213E-5 1.078E-4 1.8449E-4 1.5668E-4 1.8547E-4 9.3033E-5 stdev 12.0004 8.2495 8.9836 2.8642 2.3407 5.8314 4.0315 8.0995 18.4267 5.9335 33.311 7.5143E-3 8.102E-3 0.0111 3.8099E-3 7.8667E-3 5.4676E-3 6.7618E-3 8.1331E-3 4.147E-3 2.8396E-3 2.6356E-3 0.0428 0.0454 0.1863 0.1806 0.0374 8.1584E-3 9.6337E-3 6.1008E-3 4.7373E-3 5.0588E-3 4.1457E-3 4.4401E-3 0.0104 0.0104 2.1979E-3 6.0616E-3 5.0237E-3 0.0163 0.0318 6.5814E-3 0.0273 7.0366E-4 3.9349E-7 0.024 7.4768 8.6184E-3 7.1058E-4 0.5533 16.4066 0.4741 8.6368 0.9874 3.399 0.0115 9.3676E-3 7.2084E-3 8.3334E-3 9.6297E-3 7.9225E-3 7.7767E-3 6.4237E-3 0.013 9.4837E-3 0.0112 8.6907E-3 6.8682E-3 6.0991E-3 3.2687E-3 4.0313E-3 6.7943E-3 5.8234E-3 1.8302E-3 3.4113E-3 7.13E-3 6.3001E-3 5.4039E-3 3.6154E-3 variance 144.0103 68.054 80.7056 8.2037 5.4788 34.0054 16.2532 65.6011 339.5445 35.2068 1109.6211 5.6465E-5 6.5642E-5 1.2239E-4 1.4515E-5 6.1886E-5 2.9894E-5 4.5722E-5 6.6147E-5 1.7198E-5 8.0635E-6 6.9464E-6 1.8345E-3 2.0605E-3 0.0347 0.0326 1.3993E-3 6.656E-5 9.2808E-5 3.722E-5 2.2442E-5 2.5591E-5 1.7187E-5 1.9715E-5 1.083E-4 1.0737E-4 4.8308E-6 3.6743E-5 2.5237E-5 2.6561E-4 1.0122E-3 4.3315E-5 7.4339E-4 4.9513E-7 1.5484E-13 5.7681E-4 55.9026 7.4276E-5 5.0493E-7 0.3061 269.1757 0.2248 74.5948 0.9749 11.5535 1.3315E-4 8.7752E-5 5.196E-5 6.9445E-5 9.2732E-5 6.2766E-5 6.0477E-5 4.1263E-5 1.6957E-4 8.994E-5 1.2596E-4 7.5528E-5 4.7173E-5 3.7199E-5 1.0684E-5 1.6251E-5 4.6162E-5 3.3912E-5 3.3495E-6 1.1637E-5 5.0837E-5 3.9691E-5 2.9202E-5 1.3071E-5 median -155467.5734 -155251.6274 -215.1723 -6332.9114 -3195.002 -16833.019 -9693.4711 -30901.4367 -52604.147 -35691.0502 126.7659 0.1735 0.2212 0.2176 0.1497 0.2837 0.2009 0.0606 0.06 0.0483 0.044 0.0288 0.3214 0.2721 1.3019 1.8131 0.3699 0.0692 0.0688 0.0666 0.0647 0.0629 0.0131 0.0117 0.0466 0.0437 8.5268E-3 0.02 5.7132E-3 0.0536 0.2083 0.037 0.2218 4.3819E-3 9.3896E-7 0.224 -176.4026 0.0231 4.3857E-3 -4.623 71.5672 -3.2958 39.7661 9.3213 35.1938 0.3611 0.2874 0.1291 0.2224 0.35 0.2888 0.1548 0.2061 0.3631 0.2823 0.155 0.1991 0.33 0.4012 0.0629 0.2057 0.3845 0.3924 0.0436 0.1793 0.3213 0.4012 0.1012 0.1763 value range [-155557.8486, -155423.9577] [-155292.5496, -155223.8678] [-301.134, -182.2597] [-6346.642, -6322.0793] [-3206.5381, -3185.7546] [-16860.6055, -16810.4932] [-9714.3548, -9678.3442] [-30937.3686, -30866.1597] [-52686.7828, -52533.5979] [-35721.6789, -35667.0285] [60.0087, 844.0057] [0.1449, 0.2075] [0.1885, 0.2581] [0.1775, 0.2671] [0.1351, 0.1644] [0.2451, 0.3214] [0.1817, 0.2237] [0.0362, 0.0912] [0.0346, 0.1014] [0.0346, 0.0661] [0.033, 0.0568] [0.0192, 0.0408] [0.1785, 0.5805] [0.1388, 0.5272] [0.7054, 2.2327] [1.2231, 2.749] [0.2604, 0.5443] [0.0421, 0.1083] [0.0337, 0.11] [0.0427, 0.0945] [0.0457, 0.0851] [0.0442, 0.0865] [1.6238E-3, 0.0345] [1.3595E-3, 0.0359] [0.018, 0.0997] [9.5022E-3, 0.0914] [1.4213E-3, 0.0196] [1.4229E-3, 0.0566] [3.0171E-13, 0.0379] [0.0116, 0.1367] [0.0991, 0.3532] [0.0149, 0.0714] [0.1394, 0.3937] [7.6263E-4, 6.655E-3] [2.7076E-8, 4.5125E-6] [0.1524, 0.3999] [-251.3539, -159.7706] [1.3462E-3, 0.0724] [7.8464E-4, 6.693E-3] [-10.0263, -3.4143] [48.4971, 429.5659] [-8.952, -3.1118] [34.2458, 254.7084] [6.2775, 13.627] [24.043, 55.7605] [0.3215, 0.4032] [0.2527, 0.3329] [0.0995, 0.1594] [0.1927, 0.2548] [0.311, 0.394] [0.2601, 0.3215] [0.1239, 0.1898] [0.1816, 0.2345] [0.3168, 0.4174] [0.2393, 0.3225] [0.1113, 0.2063] [0.1661, 0.2348] [0.3059, 0.3576] [0.3801, 0.4251] [0.0524, 0.0787] [0.19, 0.2204] [0.3578, 0.4075] [0.3704, 0.4181] [0.0367, 0.0519] [0.1672, 0.1932] [0.2954, 0.3497] [0.3797, 0.425] [0.0829, 0.1227] [0.1628, 0.1927] geometric mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 129.4443 0.1736 0.2213 0.2175 0.1499 0.2837 0.201 0.0605 0.0597 0.0483 0.044 0.0287 0.322 0.2719 1.3067 1.8085 0.3702 0.0692 0.0686 0.0664 0.0645 0.0628 0.0128 0.0113 0.0463 0.043 8.3841E-3 0.0195 2.0597E-3 0.0528 0.2074 0.0368 0.2228 4.2253E-3 9.0117E-7 0.2249 n/a 0.0221 4.2349E-3 n/a 74.2432 n/a 41.7275 9.3138 35.2025 0.3609 0.2872 0.129 0.2222 0.35 0.2887 0.1547 0.2061 0.3633 0.2821 0.1549 0.1987 0.3299 0.4012 0.0629 0.2057 0.3844 0.3925 0.0437 0.1793 0.3213 0.4011 0.1011 0.1763 95% HPD interval [-155492.0518, -155445.1461] [-155268.0891, -155235.898] [-237.6683, -201.8004] [-6338.7319, -6327.5328] [-3199.6314, -3190.4531] [-16844.7523, -16821.8891] [-9701.6246, -9685.901] [-30917.3377, -30885.6508] [-52640.1096, -52567.9857] [-35702.7376, -35679.4729] [81.883, 196.1619] [0.1596, 0.189] [0.206, 0.2378] [0.1967, 0.2396] [0.1425, 0.1574] [0.2686, 0.2995] [0.1907, 0.212] [0.048, 0.0743] [0.0444, 0.0759] [0.0406, 0.0567] [0.0383, 0.0493] [0.0237, 0.034] [0.2466, 0.4094] [0.1892, 0.3652] [0.9786, 1.6862] [1.4635, 2.1659] [0.3, 0.4433] [0.0543, 0.0863] [0.0512, 0.089] [0.0548, 0.0788] [0.0556, 0.0741] [0.0535, 0.0731] [5.7811E-3, 0.0216] [4.2659E-3, 0.0211] [0.0287, 0.0687] [0.0243, 0.0645] [4.6485E-3, 0.0131] [9.2614E-3, 0.0327] [3.0171E-13, 0.0156] [0.0256, 0.0878] [0.1478, 0.2724] [0.0248, 0.0506] [0.1741, 0.2789] [2.8132E-3, 5.5542E-3] [2.523E-7, 1.7515E-6] [0.1824, 0.2752] [-193.3223, -166.0519] [7.6178E-3, 0.0407] [2.8101E-3, 5.5886E-3] [-5.8596, -3.8263] [54.3334, 106.5359] [-4.4503, -3.1118] [34.335, 58.2638] [7.5572, 11.3915] [28.8564, 42.2306] [0.3391, 0.3845] [0.2686, 0.3051] [0.1158, 0.1435] [0.2047, 0.2376] [0.3313, 0.3688] [0.2734, 0.3045] [0.1406, 0.1708] [0.1939, 0.2188] [0.3389, 0.3893] [0.2633, 0.2999] [0.1336, 0.1771] [0.1815, 0.2159] [0.3168, 0.3435] [0.3896, 0.4134] [0.057, 0.0696] [0.1979, 0.2137] [0.3713, 0.3974] [0.3811, 0.4037] [0.0404, 0.0474] [0.1726, 0.1857] [0.3076, 0.3357] [0.3882, 0.4126] [0.0906, 0.1115] [0.1694, 0.1835] auto-correlation time (ACT) 60567.8869 10880.142 1.4458E5 18747.2663 31244.6361 16497.7099 29520.7935 38652.0427 49328.9487 21649.6866 30955.3933 10836.9841 12485.0213 11142.0919 31246.2388 20730.7097 19294.9329 38195.561 36437.4011 37458.6766 59268.0111 57675.0215 58093.9566 70114.1917 90406.4695 1.9199E5 1.0118E5 27096.2342 20482.2729 20314.7301 24562.3583 27171.4699 17779.9962 41534.459 36381.9438 49532.5415 27984.3701 16724.7227 1.6999E5 23299.253 86299.8609 31858.5253 42536.6027 16890.7298 30123.5105 37227.6131 12057.0528 8925.2828 15851.6099 12352.4882 8689.4587 1021.3076 1006.0713 19793.1519 26268.7685 40156.346 29174.4383 28551.7705 32224.1755 46653.5561 45595.8795 52294.828 47976.3521 47803.1271 37731.6547 74042.1617 54440.1937 45057.4785 43542.7309 1.056E5 38355.2783 94885.7943 1.009E5 2.1386E5 89883.2445 60259.6004 55663.518 1.0602E5 59595.5155 effective sample size (ESS) 1486 8272.1 622.5 4800.8 2880.6 5455.4 3048.8 2328.5 1824.5 4157.2 2907.5 8305.1 7208.8 8077.7 2880.4 4341.5 4664.5 2356.3 2470 2402.7 1518.6 1560.5 1549.2 1283.6 995.5 468.8 889.5 3321.6 4394.1 4430.4 3664.2 3312.4 5062 2166.9 2473.8 1817 3216.2 5381.4 529.5 3862.9 1042.9 2825.1 2115.9 5328.5 2987.8 2417.6 7464.7 10083.9 5677.8 7286.1 10357.6 88124.3 89458.9 4547.1 3426.2 2241.3 3085 3152.2 2793 1929.2 1973.9 1721 1876 1882.8 2385.3 1215.6 1653.2 1997.5 2067 852.3 2346.5 948.5 892 420.8 1001.3 1493.6 1616.9 848.9 1510.2 number of samples 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002 90002