Abstract
Raw data for Figure 7 in Chapman, P. A., Day, R. C., Hudson, D. T., Ward, J. M., Morgan, X. C., & Beck, C. W. (2025). Commensal skin bacteria interact with the innate immune system to promote tail regeneration in Xenopus laevis tadpoles. Developmental Dynamics, https://doi.org/10.1002/dvdy.70088.
Large table in excel indicating proportions of gram-negative, gram-positive and unknown bacterial reads from a set of 438 Xenopus tadpole tails, of 503 that had enough reads to pass the filters. Each tadpole is also recorded for regeneration status at 1 week (full regeneration FR, partial good PG partial bad PB and no regeneration NR). Table provides raw data as well as statistical analysis for Figure 7 in the paper.
Two figures, concerned with how 16S rRNA gene sequences were filtered and processed.
#1 A. Rarefaction curve for 16S rRNA sequenced tadpole tail samples. B. Read count histogram.
#2 Silhouette analysis of 16S rRNA microbiome community data from tadpole tails. Hopkins statistic 0.91.