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Unlocking Antarctic molecular time-capsules - Recovering historical environmental DNA from museum-preserved sponges
Journal article   Open access   Peer reviewed

Unlocking Antarctic molecular time-capsules - Recovering historical environmental DNA from museum-preserved sponges

Gert-Jan Jeunen, Sadie Mills, Miles Lamare, Grant A. Duffy, Michael Knapp, Jo-Ann L. Stanton, Stefano Mariani, Jackson Treece, Sara Ferreira, Benjamin Duran-Vinet, …
Molecular ecology resources, Vol.24(7), e14001
25/07/2024
Handle:
https://hdl.handle.net/10523/40141

Abstract

dried DNA extraction ethanol DNA extraction fish diversity frozen DNA extraction metabarcoding Porifera
Marine sponges have recently emerged as efficient natural environmental DNA (eDNA) samplers. The ability of sponges to accumulate eDNA provides an exciting opportunity to reconstruct contemporary communities and ecosystems with high temporal and spatial precision. However, the use of historical eDNA, trapped within the vast number of specimens stored in scientific collections, opens up the opportunity to begin to reconstruct the communities and ecosystems of the past. Here, we define the term 'heDNA' to denote the historical environmental DNA that can be obtained from the recent past with high spatial and temporal accuracy. Using a variety of Antarctic sponge specimens stored in an extensive marine invertebrate collection, we were able to recover information on Antarctic fish biodiversity from specimens up to 20 years old. We successfully recovered 64 fish heDNA signals from 27 sponge specimens. Alpha diversity measures did not differ among preservation methods, but sponges stored frozen had a significantly different fish community composition compared to those stored dry or in ethanol. Our results show that we were consistently and reliably able to extract the heDNA trapped within marine sponge specimens, thereby enabling the reconstruction and investigation of communities and ecosystems of the recent past with a spatial and temporal resolution previously unattainable. Future research into heDNA extraction from other preservation methods, as well as the impact of specimen age and collection method, will strengthen and expand the opportunities for this novel resource to access new knowledge on ecological change during the last century.
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Molecular Ecology Resources - 2024 - Jeunen - Unlocking Antarctic molecular time‐capsules Recovering historical2.42 MBDownloadView
Published (Version of record) Open Access CC BY-NC-ND V4.0
url
https://doi.org/10.1111/1755-0998.14001View
Published (Version of record) Open CC BY-NC-ND V4.0

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